PlantCV
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Using Jupyter Notebooks
Summary of Output Measurements
Contributing
Contributing to PlantCV
Code of Conduct
Adding/Editing Documentation
Pull Request Review Process
Tutorials
Workflow Parallelization
Exporting Data
PlantCV Namespace
PlantCV
Analyze Color
Analyze NIR
Analyze Shape
Analyze Thermal
Apply Mask
Auto Crop
Background Subtraction
Boundary Line Tools
Horizontal Boundary Tool
Vertical Boundary Tool
Canny Edge Detection
Closing
Cluster Contours
Cluster Contours and Split Images
Color Palette
Colorspace Conversion
RGB to Gray
RGB to CMYK
RGB to LAB
RGB to HSV
Crop
Crop and Position Mask
Dilation
Distance Transform
Erosion
Fill Objects
Fill Holes
Find Objects
Flip Image
Filters
Laplace Filter
Sobel Filter
Scharr Filter
Gaussian Blur
Get Kernel
Get NIR Images
Histogram Normalization
Hyperspectral Data
Analyze index
Analyze spectral
Calibrate
Spectral Index
Extract wavelength
Spectral data objects
Image Add
Image Subtract
Image Fusion
Invert
Landmark Analysis
Acute Vertex
x-Axis Pseudolandmarks
y-Axis Pseudolandmarks
Scale Features
Landmark Reference Point Distribution
Logical Operations
Logical Operations-And
Logical Operations-Or
Logical Operations-XOr
Median Blur
Morphology Functions
Analyze_stem
Check Cycles
Fill Segments
Find Branches
Find Tips
Prune
Segment Angles
Combine Segments
Segment Curvature
Segment Euclidean Length
Segment ID
Segment Insertion Angle
Segment Path Length
Segment Skeleton
Segment Sort
Segment Tangent Angle
Skeletonize
Naive Bayes Classifier
Object Composition
Opening
Output Mask
Outputs Class
Photosynthesis Functions
Read CropReporter Data
Analyze Fv/Fm
Params (Debugging)
Print Image
Print Results
Plot Image
Read Image
Read Bayer Raw Image
Rectangle Mask
Report Size Marker
Region of Interest Tools
Create a Circular ROI
Create an Elliptical ROI
Create a Rectangular ROI
Create a Custom ROI
Create ROI from Binary Image
Create Multi ROIs
Filter Objects by ROI
Convert ROI to Mask
Rotate
Shift Image
Spatial Clustering
Spectral Index
Standard Deviation Filter
Thresholding Methods
Binary Threshold
Custom Range Threshold
Gaussian Adaptive Threshold
Mask Bad Threshold
Mean Adaptive Threshold
Otsu Auto Threshold
Saturation Threshold
Triangle Auto Threshold
Texture Threshold
Transformation Methods
Auto-Detect Color Card
Create Color Card Mask
Convert Color Card to Matrix
Calculate Moore-Penrose Inverse Matrix
Create Color Correction Matrix
Apply Color Correction Matrix
Color Correction Workflow
Quick Color Check
Load Matrix
Save Matrix
Gamma Correction
Nonuniform Illumination Correction
Perspective warp
Rescale Image Values
Resize Images
Visualization Methods
Auto Threshold Methods
Clustered Contours
Colorize Label Image
Colorize Masks
Colorspaces
Histogram
Hyperspectral Histogram
Overlay Images
Object Size ECDF
Object Sizes
Pseudocolor
Watershed Segmentation
White balance
Within Frame
Machine Learning Training
Naive Bayes
Naive Bayes Multiclass
Parallelization
Configure Parallelization
Metadata Parser
Job Builder
Multiprocess
Process Results
Workflow Parallelization
Accessory tools
PlantCV
»
Nir tutorial
Edit on GitHub
Tutorial: Single plant NIR image workflow
¶
Check out our interactive NIR tutorial!
GitHub
Check out our interactive NIR tutorial! Check out our interactive NIR tutorial!