Identifies objects and fills objects that are less than specified size

plantcv.fill(bin_img, size)

returns fill_image

  • Parameters:
    • bin_img - Binary image data
    • size - minimum object area size in pixels (integer), smaller objects will be filled
  • Context:
    • Used to reduce image noise
  • Example use:

from plantcv import plantcv as pcv

# Set global debug behavior to None (default), "print" (to file), or "plot" (Jupyter Notebooks or X11)
pcv.params.debug = "print"

# Apply fill to a binary image that has had a median blur applied.
# Image mask is the same binary image with median blur.

binary_img = pcv.median_blur(img, 5)

fill_image = pcv.fill(binary_img, 200)

Binary image with median blur


Binary image with median blur and fill (200 pixels)