Get NIR Images

Gets NIR image that matches VIS image

plantcv.get_nir(path, filename)

returns nir_path

  • Parameters:
    • path - path to base image (vis image) to match
    • filename - filename of base image (vis image) to match
  • Context:

    • This is a function that is likely only useful for those with multiple camera types. We use this function to find the matching NIR image to a VIS image, that is found in the same directory but which contains multiple images (regex). Would need to be modified for different file naming structure / image types / file structures.
  • Example use:

  • Use in VIS/NIR Tutorial

from plantcv import plantcv as pcv

# Set global debug behavior to None (default), "print" (to file), or "plot" (Jupyter Notebooks or X11)
pcv.params.debug = "print"

# Get NIR image
nir_path = pcv.get_nir("/home/images/sorghum/snapshot1", "VIS_SV_90_z300_h1_g0_e85_v500_86939.png")