Segment Insertion Angles

Measure leaf insertion angles.

plantcv.morphology.segment_insertion_angle(skel_img, segmented_img, leaf_objects, stem_objects, size)

returns labeled image

Reference Image: segmented_img

Screenshot


from plantcv import plantcv as pcv

# Set global debug behavior to None (default), "print" (to file), 
# or "plot" (Jupyter Notebooks or X11)
pcv.params.debug = "print"

# Adjust line thickness with the global line thickness parameter (default = 5)
pcv.params.line_thickness = 3 

labeled_img = pcv.morphology.segment_insertion_angle(skel_img=skeleton,
                                                     segmented_img=leaves_segment, 
                                                     leaf_objects=leaf_obj,
                                                     stem_objects=stem_objs,
                                                     size=20)

# Access data stored out from segment_insertion_angle
segment_insertion_angles = pcv.outputs.observations['segment_insertion_angle']['value']

Labeled Image

Screenshot

Source Code: Here