Fill Holes

Cleans pepper noise (black holes) by doing a flood fill


returns fill_image

  • Parameters:
    • bin_img - Binary image data
  • Context:
    • Used to reduce image noise
  • Example use:
    • Below

from plantcv import plantcv as pcv

# Set global debug behavior to None (default), "print" (to file), 
# or "plot" (Jupyter Notebooks or X11)
pcv.params.debug = "print"

# Apply fill holes to a binary image 

fill_image = pcv.fill_holes(binary_img, 200)

Binary image


Binary image with holes filled